Apps for You

Tools for modeling molecules, from
the Laufer Center and the Dill Research Group.

TRIFORCE

Semianalytical calculation of molecular surface areas and derivatives as a function of atomic coordinates and radii.

i-PMF

Potentials of mean force for ions of various sizes, interacting in explicit water (TIP3P).

SEA-web

Compute solvation free energies using our SEA water model.

FlexE-web

Measure the similarity between two protein structures using a simple elastic network model.

NetAvg

A tool for selecting one structure to represent an ensemble of conformations.

interacto.me

An interactive tool for visualizing protein-protein interaction networks. Developed by Tinybike Interactive.

HPlattice

HPlattice is a Python library for the HP lattice model of Dill and Chan. It is ideally used as a teaching tool, or as a way to quickly prototype 2D lattice simulation ideas with easy-to-use extensible code.